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LOC109907626 probable ATP-dependent RNA helicase ddx6 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109907626, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109907626
Gene description
probable ATP-dependent RNA helicase ddx6
See related
Ensembl:ENSOKIG00005017435
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109907626 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
14
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG17 NC_034190.2 (38329277..38382892, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG17 NC_034190.1 (30668176..30720026, complement)

Linkage Group LG17 - NC_034190.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116354404 Neighboring gene translocase of outer mitochondrial membrane 40 homolog, like Neighboring gene sodium/hydrogen exchanger 3-like Neighboring gene uncharacterized LOC116354406 Neighboring gene uncharacterized LOC116354405

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase ddx6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034190.2 Reference Okis_V2 Primary Assembly

    Range
    38329277..38382892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031793778.1 → XP_031649638.1  probable ATP-dependent RNA helicase ddx6

    UniProtKB/TrEMBL
    A0A8C7GGL6
    Related
    ENSOKIP00005041336.1, ENSOKIT00005043594.1
    Conserved Domains (2) summary
    PRK01297
    Location:26 → 454
    PRK01297; ATP-dependent RNA helicase RhlB; Provisional
    cd17940
    Location:94 → 295
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases