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LOC109907617 helicase SKI2W-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109907617, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109907617
Gene description
helicase SKI2W-like
See related
Ensembl:ENSOKIG00005017068
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109907617 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
29
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG17 NC_034190.2 (37861372..37917344)
100 previous assembly Okis_V1 (GCF_002021735.1) LG17 NC_034190.1 (30191419..30250908)

Linkage Group LG17 - NC_034190.2Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain-containing protein 12 Neighboring gene negative elongation factor E-like Neighboring gene proline-rich transmembrane protein 1-like Neighboring gene transmembrane protein 268

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase SKI2W-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034190.2 Reference Okis_V2 Primary Assembly

    Range
    37861372..37917344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020505693.2 → XP_020361282.1  helicase SKI2W-like

    UniProtKB/TrEMBL
    A0A8C7DUV6, A0A8C7GD39
    Related
    ENSOKIP00005040651.1, ENSOKIT00005042884.1
    Conserved Domains (1) summary
    cl28230
    Location:310 → 1248
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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