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LOC109907564 CCR4-NOT transcription complex subunit 3 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109907564, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109907564
Gene description
CCR4-NOT transcription complex subunit 3
See related
Ensembl:ENSOKIG00005040384
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109907564 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
18
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG17 NC_034190.2 (35201967..35218292, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG17 NC_034190.1 (27427370..27443384, complement)

Linkage Group LG17 - NC_034190.2Genomic Context describing neighboring genes Neighboring gene protein shisa-7 Neighboring gene uncharacterized LOC109907568 Neighboring gene splicing factor U2AF 65 kDa subunit Neighboring gene uncharacterized LOC109908649

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034190.2 Reference Okis_V2 Primary Assembly

    Range
    35201967..35218292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031793684.1 → XP_031649544.1  CCR4-NOT transcription complex subunit 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C7JX02
    Conserved Domains (3) summary
    COG5665
    Location:656 → 1010
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:89 → 307
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:879 → 1004
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  2. XM_020505602.2 → XP_020361191.1  CCR4-NOT transcription complex subunit 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C7JX02
    Related
    ENSOKIP00005093541.1, ENSOKIT00005099982.1
    Conserved Domains (3) summary
    COG5665
    Location:578 → 932
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 229
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:801 → 926
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  3. XM_031793685.1 → XP_031649545.1  CCR4-NOT transcription complex subunit 3 isoform X7

    UniProtKB/TrEMBL
    A0A8C7JX02
    Conserved Domains (3) summary
    COG5665
    Location:561 → 915
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 227
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:784 → 909
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  4. XM_020505603.2 → XP_020361192.1  CCR4-NOT transcription complex subunit 3 isoform X5

    UniProtKB/TrEMBL
    A0A8C7JX02
    Conserved Domains (3) summary
    COG5665
    Location:576 → 930
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 227
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:799 → 924
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  5. XM_020505604.2 → XP_020361193.1  CCR4-NOT transcription complex subunit 3 isoform X6

    UniProtKB/TrEMBL
    A0A8C7JX02
    Related
    ENSOKIP00005093517.1, ENSOKIT00005099953.1
    Conserved Domains (3) summary
    COG5665
    Location:563 → 917
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 229
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:786 → 911
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  6. XM_031793683.1 → XP_031649543.1  CCR4-NOT transcription complex subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C7JX02
    Conserved Domains (3) summary
    COG5665
    Location:643 → 997
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:89 → 309
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:866 → 991
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  7. XM_031793682.1 → XP_031649542.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C7JSV1, A0A8C7JX02
    Related
    ENSOKIP00005093162.1, ENSOKIT00005099517.1
    Conserved Domains (3) summary
    COG5665
    Location:658 → 1012
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:89 → 309
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:881 → 1006
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  8. XM_031793687.1 → XP_031649547.1  CCR4-NOT transcription complex subunit 3 isoform X9

    UniProtKB/TrEMBL
    A0A8C7JU35
    Related
    ENSOKIP00005093678.1, ENSOKIT00005100142.1
    Conserved Domains (3) summary
    COG5665
    Location:491 → 845
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:1 → 142
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:714 → 839
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  9. XM_031793686.1 → XP_031649546.1  CCR4-NOT transcription complex subunit 3 isoform X8

    UniProtKB/TrEMBL
    A0A8C7JU35
    Conserved Domains (3) summary
    COG5665
    Location:489 → 843
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:1 → 140
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:712 → 837
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
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