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galnt15 polypeptide N-acetylgalactosaminyltransferase 15 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109907247, updated on 14-Dec-2023

Summary

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Gene symbol
galnt15
Gene description
polypeptide N-acetylgalactosaminyltransferase 15
See related
Ensembl:ENSOKIG00005043842
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See galnt15 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG17 NC_034190.2 (16635935..16651428, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG17 NC_034190.1 (9705770..9727354, complement)

Linkage Group LG17 - NC_034190.2Genomic Context describing neighboring genes Neighboring gene raftlin Neighboring gene oxidoreductase NAD-binding domain containing 1 Neighboring gene protein QNR-71-like Neighboring gene insulin-like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034190.2 Reference Okis_V2 Primary Assembly

    Range
    16635935..16651428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020505111.2 → XP_020360700.1  polypeptide N-acetylgalactosaminyltransferase 15

    UniProtKB/TrEMBL
    A0A8C7N465
    Related
    ENSOKIP00005099533.1, ENSOKIT00005106680.1
    Conserved Domains (2) summary
    cd02510
    Location:191 → 488
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:501 → 640
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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