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LOC109906683 CCR4-NOT transcription complex subunit 9 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109906683, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109906683
Gene description
CCR4-NOT transcription complex subunit 9
See related
Ensembl:ENSOKIG00005050886
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109906683 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
8
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG16 NC_034189.2 (39627040..39630244)
100 previous assembly Okis_V1 (GCF_002021735.1) LG16 NC_034189.1 (29560788..29562799)

Linkage Group LG16 - NC_034189.2Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 1-alpha/beta-like Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like Neighboring gene protein FAM207A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 9
Names
cell differentiation protein RCD1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034189.2 Reference Okis_V2 Primary Assembly

    Range
    39627040..39630244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031792370.1 → XP_031648230.1  CCR4-NOT transcription complex subunit 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C7L654, A0A8C7LJV9
    Conserved Domains (1) summary
    pfam04078
    Location:23 → 285
    Rcd1; Cell differentiation family, Rcd1-like

  2. XM_020504518.2 → XP_020360107.2  CCR4-NOT transcription complex subunit 9 isoform X2

    UniProtKB/TrEMBL
    A0A8C7LJV9
    Related
    ENSOKIP00005117720.1, ENSOKIT00005125845.1
    Conserved Domains (1) summary
    pfam04078
    Location:23 → 281
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
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