U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cbl Cbl proto-oncogene [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109905383, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
cbl
Gene description
Cbl proto-oncogene
See related
Ensembl:ENSOKIG00005004818
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cbl in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG15 NC_034188.2 (49746457..49811047)
100 previous assembly Okis_V1 (GCF_002021735.1) LG15 NC_034188.1 (32309573..32379846)

Linkage Group LG15 - NC_034188.2Genomic Context describing neighboring genes Neighboring gene glutamate receptor ionotropic, kainate 4-like Neighboring gene U7 small nuclear RNA Neighboring gene dynein regulatory complex subunit 12 homolog Neighboring gene cell surface glycoprotein MUC18 Neighboring gene calmodulin-alpha-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase CBL

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034188.2 Reference Okis_V2 Primary Assembly

    Range
    49746457..49811047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020502724.2 → XP_020358313.1  E3 ubiquitin-protein ligase CBL

    UniProtKB/TrEMBL
    A0A8C7CS50, A0A8C7CSX5
    Related
    ENSOKIP00005010750.1, ENSOKIT00005011441.1
    Conserved Domains (6) summary
    cd09920
    Location:239 → 335
    SH2_Cbl-b_TKB; Src homology 2 (SH2) domain found in the Cbl-b TKB domain
    cd14393
    Location:873 → 912
    UBA_c-Cbl; UBA domain found in E3 ubiquitin-protein ligase Cbl and similar proteins
    pfam02262
    Location:37 → 158
    Cbl_N; CBL proto-oncogene N-terminal domain 1
    pfam02761
    Location:162 → 245
    Cbl_N2; CBL proto-oncogene N-terminus, EF hand-like domain
    cd16709
    Location:345 → 410
    RING-HC_Cbl-b; RING finger, HC subclass, found in E3 ubiquitin-protein ligase Cbl-b and similar proteins
    cl26464
    Location:464 → 711
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.