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cnot7 CCR4-NOT transcription complex, subunit 7 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109904984, updated on 11-Apr-2024

Summary

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Gene symbol
cnot7
Gene description
CCR4-NOT transcription complex, subunit 7
See related
Ensembl:ENSOKIG00005007207
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See cnot7 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG15 NC_034188.2 (19023978..19035143, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG15 NC_034188.1 (5303757..5313871, complement)

Linkage Group LG15 - NC_034188.2Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 20b Neighboring gene mitochondrial calcium uptake family, member 3b Neighboring gene uncharacterized LOC116353576 Neighboring gene zinc finger DHHC-type palmitoyltransferase 2 Neighboring gene myotubularin related protein 7a Neighboring gene solute carrier family 7 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034188.2 Reference Okis_V2 Primary Assembly

    Range
    19023978..19035143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020502075.2 → XP_020357664.1  CCR4-NOT transcription complex subunit 7 isoform X1

    UniProtKB/TrEMBL
    A0A8C7F5X9
    Related
    ENSOKIP00005016152.1, ENSOKIT00005017221.1
    Conserved Domains (1) summary
    cl23804
    Location:1 → 264
    CAF1; CAF1 family ribonuclease

  2. XM_020502076.2 → XP_020357665.1  CCR4-NOT transcription complex subunit 7 isoform X2

    Conserved Domains (1) summary
    cl23804
    Location:1 → 215
    CAF1; CAF1 family ribonuclease

  3. XM_020502078.2 → XP_020357667.1  CCR4-NOT transcription complex subunit 7 isoform X3

    Conserved Domains (1) summary
    cl23804
    Location:13 → 179
    CAF1; CAF1 family ribonuclease

  4. XM_020502077.2 → XP_020357666.1  CCR4-NOT transcription complex subunit 7 isoform X3

    Conserved Domains (1) summary
    cl23804
    Location:13 → 179
    CAF1; CAF1 family ribonuclease

  5. XM_020502074.2 → XP_020357663.1  CCR4-NOT transcription complex subunit 7 isoform X1

    UniProtKB/TrEMBL
    A0A8C7F5X9
    Conserved Domains (1) summary
    cl23804
    Location:1 → 264
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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