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LOC109904502 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109904502, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109904502
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like
See related
Ensembl:ENSOKIG00005012610
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109904502 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
14
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG2 NC_034175.2 (51558302..51569362, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG2 NC_034175.1 (50332220..50341434, complement)

Linkage Group LG2 - NC_034175.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109868082 Neighboring gene translin-like Neighboring gene uncharacterized LOC109868134 Neighboring gene small nucleolar RNA ACA64 Neighboring gene small nucleolar RNA ACA64

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034175.2 Reference Okis_V2 Primary Assembly

    Range
    51558302..51569362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031797246.1 → XP_031653106.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7FJU5
    Conserved Domains (1) summary
    pfam00233
    Location:306 → 539
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_031797244.1 → XP_031653104.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7FJU5, A0A8C7FK53
    Related
    ENSOKIP00005029232.1, ENSOKIT00005030932.1
    Conserved Domains (1) summary
    pfam00233
    Location:312 → 545
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases