U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109902899 torsin-1A-interacting protein 2-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109902899, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109902899
Gene description
torsin-1A-interacting protein 2-like
See related
Ensembl:ENSOKIG00005036062
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109902899 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
9
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (6937835..6957513, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG13 NC_034186.1 (65367796..65369465)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene torsin-1A-interacting protein 2 Neighboring gene uncharacterized LOC109902894

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    6937835..6957513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031785471.1 → XP_031641331.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7J484, A0A8C7MVU6
    Conserved Domains (2) summary
    PRK14949
    Location:1 → 386
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    pfam05609
    Location:242 → 736
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_031785470.1 → XP_031641330.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7J484, A0A8C7MVU6
    Related
    ENSOKIP00005083106.1, ENSOKIT00005088694.1
    Conserved Domains (2) summary
    PRK14949
    Location:1 → 386
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    pfam05609
    Location:242 → 736
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_031785472.1 → XP_031641332.1  torsin-1A-interacting protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7J4A2, A0A8C7MVU6
    Related
    ENSOKIP00005083159.1, ENSOKIT00005088750.1
    Conserved Domains (2) summary
    PRK08581
    Location:7 → 282
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:157 → 651
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_020499591.2 → XP_020355180.2  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7MVU6
    Conserved Domains (2) summary
    PRK14949
    Location:1 → 386
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    pfam05609
    Location:242 → 709
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases