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LOC109902227 transforming growth factor beta-2 proprotein [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109902227, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109902227
Gene description
transforming growth factor beta-2 proprotein
See related
Ensembl:ENSOKIG00005007159
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109902227 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (50203579..50230684)
100 previous assembly Okis_V1 (GCF_002021735.1) LG13 NC_034186.1 (22815367..22839208, complement)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116353089 Neighboring gene RRP15-like protein Neighboring gene uncharacterized LOC109901512 Neighboring gene lysophospholipase-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type II transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type III transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta-2 proprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    50203579..50230684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020498399.2 → XP_020353988.1  transforming growth factor beta-2 proprotein

    UniProtKB/TrEMBL
    A0A8C7F5V8
    Related
    ENSOKIP00005016032.1, ENSOKIT00005017096.1
    Conserved Domains (2) summary
    cd19385
    Location:314 → 410
    TGF_beta_TGFB2; transforming growth factor beta (TGF-beta) like domain found in transforming growth factor beta-2 (TGF-beta-2) and similar proteins
    pfam00688
    Location:21 → 228
    TGFb_propeptide; TGF-beta propeptide
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases