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LOC109901825 kin of IRRE-like protein 3 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109901825, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109901825
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSOKIG00005012942
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109901825 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
15
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (69448147..69498762)
100 previous assembly Okis_V1 (GCF_002021735.1) LG13 NC_034186.1 (1721960..1780660, complement)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene intercellular adhesion molecule 1-like Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene uncharacterized LOC116376675 Neighboring gene amyloid-like protein 1 Neighboring gene ST14 transmembrane serine protease matriptase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1; kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    69448147..69498762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031837975.1 → XP_031693835.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  2. XM_031837979.1 → XP_031693839.1  kin of IRRE-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  3. XM_031837976.1 → XP_031693836.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  4. XM_031837978.1 → XP_031693838.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  5. XM_031837980.1 → XP_031693840.1  kin of IRRE-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C7FM56, A0A8C7FMR9
    Related
    ENSOKIP00005030283.1, ENSOKIT00005032015.1
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  6. XM_031837981.1 → XP_031693841.1  kin of IRRE-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  7. XM_031837982.1 → XP_031693842.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A8C7FM56
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  8. XM_031837983.1 → XP_031693843.1  kin of IRRE-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8C7FM56
    Related
    ENSOKIP00005030330.1, ENSOKIT00005032063.1
    Conserved Domains (3) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
Nucleotide Protein
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