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ubr7 ubiquitin protein ligase E3 component n-recognin 7 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109900858, updated on 14-Mar-2024

Summary

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Gene symbol
ubr7
Gene description
ubiquitin protein ligase E3 component n-recognin 7
See related
Ensembl:ENSOKIG00005004167
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See ubr7 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG12 NC_034185.2 (30524508..30543875, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG12 NC_034185.1 (21523165..21541125, complement)

Linkage Group LG12 - NC_034185.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box protein 2-like Neighboring gene COX8 domain-containing protein Neighboring gene BTB (POZ) domain containing 7 Neighboring gene transmembrane protein 251 Neighboring gene inositol-tetrakisphosphate 1-kinase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative E3 ubiquitin-protein ligase UBR7
Names
ubiquitin protein ligase E3 component n-recognin 7 (putative)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034185.2 Reference Okis_V2 Primary Assembly

    Range
    30524508..30543875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020496724.2 → XP_020352313.1  putative E3 ubiquitin-protein ligase UBR7 isoform X2

    UniProtKB/TrEMBL
    A0A8C7CQ19, A0A8C7F326
    Related
    ENSOKIP00005009529.1, ENSOKIT00005010092.1
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

  2. XM_031837368.1 → XP_031693228.1  putative E3 ubiquitin-protein ligase UBR7 isoform X2

    UniProtKB/TrEMBL
    A0A8C7CQ19, A0A8C7F326
    Related
    ENSOKIP00005009514.1, ENSOKIT00005010077.1
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

  3. XM_020496723.2 → XP_020352312.1  putative E3 ubiquitin-protein ligase UBR7 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CQ19
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

  4. XM_020496722.2 → XP_020352311.1  putative E3 ubiquitin-protein ligase UBR7 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CQ19
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)
Nucleotide Protein
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