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LOC109900233 CCR4-NOT transcription complex subunit 10-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109900233, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109900233
Gene description
CCR4-NOT transcription complex subunit 10-like
See related
Ensembl:ENSOKIG00005027185
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109900233 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022266010.1 (141123..162717)
100 previous assembly Okis_V1 (GCF_002021735.1) Linkage Group LG2 NC_034175.1 (975348..1013657)

NW_022266010.1Genomic Context describing neighboring genes Neighboring gene trafficking protein, kinesin binding 1a Neighboring gene cholecystokinin-like Neighboring gene E3 ubiquitin-protein ligase TRIM71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022266010.1 Reference Okis_V2 Primary Assembly

    Range
    141123..162717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031822102.1 → XP_031677962.1  CCR4-NOT transcription complex subunit 10-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7HXU0
    Related
    ENSOKIP00005063885.1, ENSOKIT00005067905.1
    Conserved Domains (2) summary
    sd00006
    Location:277 → 302
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:277 → 304
    TPR_1; Tetratricopeptide repeat

  2. XM_031822103.1 → XP_031677963.1  CCR4-NOT transcription complex subunit 10-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7HXU0, A0A8C7MUS3
    Related
    ENSOKIP00005063668.1, ENSOKIT00005067677.1
    Conserved Domains (3) summary
    COG0457
    Location:9 → 254
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:276 → 301
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:276 → 303
    TPR_1; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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