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LOC109899773 polyribonucleotide nucleotidyltransferase 1, mitochondrial [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109899773, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109899773
Gene description
polyribonucleotide nucleotidyltransferase 1, mitochondrial
See related
Ensembl:ENSOKIG00005017481
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109899773 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
28
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG11 NC_034184.2 (29803518..29812159)
100 previous assembly Okis_V1 (GCF_002021735.1) LG11 NC_034184.1 (48979196..48987899, complement)

Linkage Group LG11 - NC_034184.2Genomic Context describing neighboring genes Neighboring gene ubiquitin-40S ribosomal protein S27a-like Neighboring gene girdin Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 3 Neighboring gene cilia- and flagella-associated protein 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide nucleotidyltransferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034184.2 Reference Okis_V2 Primary Assembly

    Range
    29803518..29812159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020495290.2 → XP_020350879.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A8C7GKD4, A0A8C7GL37
    Related
    ENSOKIP00005043335.1, ENSOKIT00005045664.1
    Conserved Domains (1) summary
    PRK11824
    Location:38 → 748
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases