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unm_hu7910 un-named hu7910 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109899309, updated on 14-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
25
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG11 NC_034184.2 (70881646..70922976)
100 previous assembly Okis_V1 (GCF_002021735.1) LG11 NC_034184.1 (9519797..9561743, complement)

Linkage Group LG11 - NC_034184.2Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 2 subunit alpha-like Neighboring gene WD repeat domain 48 Neighboring gene clavesin-1-like Neighboring gene serine/threonine-protein kinase RIO3-like Neighboring gene regulator of MON1-CCZ1 complex-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase; calponin homology domain-containing protein DDB_G0272472; uncharacterized abhydrolase domain-containing protein DDB_G0269086

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034184.2 Reference Okis_V2 Primary Assembly

    Range
    70881646..70922976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031836245.1 → XP_031692105.1  aspartyl/asparaginyl beta-hydroxylase isoform X17

    UniProtKB/TrEMBL
    A0A8C7LG52
    Conserved Domains (4) summary
    pfam05279
    Location:59 → 259
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:236 → 419
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:320 → 346
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:489 → 643
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_031836234.1 → XP_031692094.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X4

    Conserved Domains (2) summary
    PTZ00121
    Location:262 → 920
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:59 → 286
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_031836236.1 → XP_031692096.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X6

    Conserved Domains (2) summary
    PTZ00121
    Location:243 → 901
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:40 → 267
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_031836243.1 → XP_031692103.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    Conserved Domains (4) summary
    pfam05279
    Location:67 → 294
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:368 → 551
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:452 → 478
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:621 → 775
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_031836244.1 → XP_031692104.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    Conserved Domains (4) summary
    pfam05279
    Location:67 → 294
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:361 → 544
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:445 → 471
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:614 → 768
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_020494421.2 → XP_020350010.1  aspartyl/asparaginyl beta-hydroxylase isoform X15

    UniProtKB/TrEMBL
    A0A8C7LG52
    Conserved Domains (4) summary
    pfam05279
    Location:67 → 282
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:259 → 442
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:343 → 369
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:512 → 666
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_020494422.2 → XP_020350011.1  aspartyl/asparaginyl beta-hydroxylase isoform X16

    UniProtKB/TrEMBL
    A0A8C7LG52
    Conserved Domains (4) summary
    pfam05279
    Location:67 → 267
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:244 → 427
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:328 → 354
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:497 → 651
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_031836231.1 → XP_031692091.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:270 → 928
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 294
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  9. XM_031836238.1 → XP_031692098.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X8

    Conserved Domains (1) summary
    PTZ00121
    Location:173 → 890
    PTZ00121; MAEBL; Provisional

  10. XM_031836233.1 → XP_031692093.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X3

    Conserved Domains (2) summary
    PTZ00121
    Location:178 → 913
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_031836232.1 → XP_031692092.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:265 → 923
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  12. XM_031836235.1 → XP_031692095.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:288 → 916
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  13. XM_031836237.1 → XP_031692097.1  calponin homology domain-containing protein DDB_G0272472 isoform X7

    Conserved Domains (2) summary
    PTZ00121
    Location:167 → 900
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  14. XM_031836239.1 → XP_031692099.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X9

    Conserved Domains (1) summary
    PTZ00121
    Location:206 → 864
    PTZ00121; MAEBL; Provisional

  15. XM_031836240.1 → XP_031692100.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X10

    Conserved Domains (2) summary
    PTZ00121
    Location:201 → 859
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 320
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  16. XM_031836241.1 → XP_031692101.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X11

    Conserved Domains (2) summary
    PTZ00121
    Location:208 → 836
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:67 → 297
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  17. XM_031836242.1 → XP_031692102.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X12

    Conserved Domains (1) summary
    PTZ00121
    Location:161 → 819
    PTZ00121; MAEBL; Provisional
Nucleotide Protein
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