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LOC109898582 protein Tob2-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109898582, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109898582
Gene description
protein Tob2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109898582 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
2
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (75581272..75588170, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG10 NC_034183.1 (58248451..58253155, complement)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 7B-like Neighboring gene thyrotroph embryonic factor-like Neighboring gene aconitate hydratase, mitochondrial Neighboring gene DNA-directed RNA polymerase III subunit RPC8-like Neighboring gene cold shock domain-containing protein C2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Tob2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    75581272..75588170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020493599.2 → XP_020349188.1  protein Tob2-like

    Conserved Domains (3) summary
    pfam05283
    Location:179 → 242
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    pfam07742
    Location:1 → 112
    BTG; BTG family
    cl26464
    Location:190 → 360
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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