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agtrap angiotensin II receptor-associated protein [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109896556, updated on 14-Mar-2024

Summary

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Gene symbol
agtrap
Gene description
angiotensin II receptor-associated protein
See related
Ensembl:ENSOKIG00005038223
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See agtrap in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
6
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG1 NC_034174.2 (28917220..28923443, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG1 NC_034174.1 (42713044..42719265)

Linkage Group LG1 - NC_034174.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L22 Neighboring gene uncharacterized LOC109896577 Neighboring gene draxin-A Neighboring gene 4'-phosphopantetheine phosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in angiotensin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of blood pressure IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type-1 angiotensin II receptor-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034174.2 Reference Okis_V2 Primary Assembly

    Range
    28917220..28923443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020490810.2 → XP_020346399.1  type-1 angiotensin II receptor-associated protein isoform X4

    Conserved Domains (1) summary
    pfam06396
    Location:9 → 160
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  2. XM_020490821.2 → XP_020346410.1  type-1 angiotensin II receptor-associated protein isoform X6

    Conserved Domains (1) summary
    pfam06396
    Location:9 → 158
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  3. XM_020490808.2 → XP_020346397.1  type-1 angiotensin II receptor-associated protein isoform X3

    Conserved Domains (1) summary
    pfam06396
    Location:9 → 161
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  4. XM_031814664.1 → XP_031670524.1  type-1 angiotensin II receptor-associated protein isoform X10

    Conserved Domains (1) summary
    pfam06396
    Location:46 → 182
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  5. XM_020490814.2 → XP_020346403.1  type-1 angiotensin II receptor-associated protein isoform X5

    UniProtKB/TrEMBL
    A0A8C7JL67
    Related
    ENSOKIP00005087587.1, ENSOKIT00005093657.1
    Conserved Domains (1) summary
    pfam06396
    Location:9 → 159
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  6. XM_020490831.2 → XP_020346420.1  type-1 angiotensin II receptor-associated protein isoform X8

    UniProtKB/TrEMBL
    A0A8C7JHA8
    Related
    ENSOKIP00005087576.1, ENSOKIT00005093645.1
    Conserved Domains (1) summary
    pfam06396
    Location:46 → 183
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  7. XM_031814587.1 → XP_031670447.1  type-1 angiotensin II receptor-associated protein isoform X9

    Conserved Domains (1) summary
    pfam06396
    Location:1 → 136
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  8. XM_031814468.1 → XP_031670328.1  type-1 angiotensin II receptor-associated protein isoform X7

    Conserved Domains (1) summary
    pfam06396
    Location:1 → 138
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  9. XM_031814115.1 → XP_031669975.1  type-1 angiotensin II receptor-associated protein isoform X2

    Conserved Domains (1) summary
    pfam06396
    Location:46 → 184
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

  10. XM_031814042.1 → XP_031669902.1  type-1 angiotensin II receptor-associated protein isoform X1

    Conserved Domains (1) summary
    pfam06396
    Location:46 → 185
    AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)
Nucleotide Protein
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