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LOC109896103 secreted frizzled-related protein 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109896103, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109896103
Gene description
secreted frizzled-related protein 1
See related
Ensembl:ENSOKIG00005002663
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
sfrp1
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Genomic context

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See LOC109896103 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
3
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG8 NC_034181.2 (19800061..19835263)
100 previous assembly Okis_V1 (GCF_002021735.1) LG8 NC_034181.1 (54697069..54729194, complement)

Linkage Group LG8 - NC_034181.2Genomic Context describing neighboring genes Neighboring gene cytochrome b ascorbate-dependent protein 3 Neighboring gene lysyl oxidase homolog 2B Neighboring gene zinc finger matrin-type protein 4-like Neighboring gene transcriptional and immune response regulator-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034181.2 Reference Okis_V2 Primary Assembly

    Range
    19800061..19835263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020490345.2 → XP_020345934.1  secreted frizzled-related protein 1

    UniProtKB/TrEMBL
    A0A8C7CY99
    Related
    ENSOKIP00005005750.1, ENSOKIT00005006129.1
    Conserved Domains (2) summary
    cd03580
    Location:178 → 302
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:46 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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