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LOC109894960 tight junction protein ZO-2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109894960, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109894960
Gene description
tight junction protein ZO-2
See related
Ensembl:ENSOKIG00005002402
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
tjp2
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Genomic context

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See LOC109894960 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
23
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG8 NC_034181.2 (10029310..10214918, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG8 NC_034181.1 (64896121..65161432)

Linkage Group LG8 - NC_034181.2Genomic Context describing neighboring genes Neighboring gene amyloid-beta A4 precursor protein-binding family A member 1-like Neighboring gene family with sequence similarity 189 member A2 Neighboring gene up-regulator of cell proliferation-like Neighboring gene frataxin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2
Names
tight junction protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034181.2 Reference Okis_V2 Primary Assembly

    Range
    10029310..10214918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031829493.1 → XP_031685353.1  tight junction protein ZO-2

    UniProtKB/TrEMBL
    A0A8C7F118
    Related
    ENSOKIP00005005281.1, ENSOKIT00005005639.1
    Conserved Domains (3) summary
    cd00992
    Location:41 → 126
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:627 → 692
    SH3; Src Homology 3 domain superfamily
    cl17190
    Location:726 → 810
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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