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pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form) [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109894590, updated on 14-Mar-2024

Summary

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Gene symbol
pabpc4
Gene description
poly(A) binding protein, cytoplasmic 4 (inducible form)
See related
Ensembl:ENSOKIG00005022837
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See pabpc4 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
15
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG7 NC_034180.2 (37182927..37197705)
100 previous assembly Okis_V1 (GCF_002021735.1) LG7 NC_034180.1 (35243296..35258074)

Linkage Group LG7 - NC_034180.2Genomic Context describing neighboring genes Neighboring gene probable histone deacetylase 1-B Neighboring gene transmembrane protein 54a Neighboring gene peptidyl-prolyl cis-trans isomerase E-like Neighboring gene gap junction beta-4 protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034180.2 Reference Okis_V2 Primary Assembly

    Range
    37182927..37197705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020488190.1 → XP_020343779.1  polyadenylate-binding protein 4-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7GFL3
    Conserved Domains (1) summary
    TIGR01628
    Location:27 → 630
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_020488192.2 → XP_020343781.1  polyadenylate-binding protein 4-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7GFL3, A0A8C7MHG6
    Related
    ENSOKIP00005054053.1, ENSOKIT00005057318.1
    Conserved Domains (1) summary
    TIGR01628
    Location:12 → 615
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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