U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109893007 C-terminal-binding protein 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109893007, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109893007
Gene description
C-terminal-binding protein 1
See related
Ensembl:ENSOKIG00005002826
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109893007 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
12
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (55674550..55689098)
100 previous assembly Okis_V1 (GCF_002021735.1) LG6 NC_034179.1 (50117760..50132302)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene lymphocyte cytosolic protein 2 Neighboring gene protein FAM53C-like Neighboring gene uncharacterized LOC109892181 Neighboring gene early growth response protein 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
C-terminal-binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    55674550..55689098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020485978.2 → XP_020341567.1  C-terminal-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CLZ4, A0A8C7CQ27
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  2. XM_031826970.1 → XP_031682830.1  C-terminal-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7CQ37, A0A8C7CWY1
    Conserved Domains (1) summary
    cd05299
    Location:17 → 335
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  3. XM_020485976.2 → XP_020341565.1  C-terminal-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CLZ4, A0A8C7CQ27
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  4. XM_020485977.2 → XP_020341566.1  C-terminal-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CLZ4, A0A8C7CQ27
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  5. XM_031826969.1 → XP_031682829.1  C-terminal-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CLZ4, A0A8C7CQ27
    Related
    ENSOKIP00005006209.1, ENSOKIT00005006620.1
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  6. XM_020485981.2 → XP_020341570.1  C-terminal-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7CQ37, A0A8C7CWY1
    Related
    ENSOKIP00005006195.1, ENSOKIT00005006607.1
    Conserved Domains (1) summary
    cd05299
    Location:17 → 335
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases