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LOC109892763 CCR4-NOT transcription complex subunit 8 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109892763, updated on 11-Apr-2024

Summary

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Gene symbol
LOC109892763
Gene description
CCR4-NOT transcription complex subunit 8
See related
Ensembl:ENSOKIG00005027451
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109892763 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (36036904..36040645)
100 previous assembly Okis_V1 (GCF_002021735.1) LG6 NC_034179.1 (29767039..29770502)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene microfibrillar-associated protein 3-like Neighboring gene protein FAM114A2-like Neighboring gene intelectin-like Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    36036904..36040645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020485528.2 → XP_020341117.1  CCR4-NOT transcription complex subunit 8

    UniProtKB/TrEMBL
    A0A8C7HY74
    Related
    ENSOKIP00005064031.1, ENSOKIT00005068055.1
    Conserved Domains (1) summary
    cl23804
    Location:1 → 264
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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Gene LinkOut

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