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LOC109891838 kin of IRRE-like protein 3 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109891838, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109891838
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSOKIG00005030794
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109891838 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (48676777..48982022)
100 previous assembly Okis_V1 (GCF_002021735.1) LG6 NC_034179.1 (42951256..43119513)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 1b Neighboring gene uncharacterized LOC109892164 Neighboring gene CXADR-like membrane protein Neighboring gene uncharacterized LOC116374318

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    48676777..48982022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031826835.1 → XP_031682695.1  kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A8C7IKA1, A0A8C7MQI4
    Related
    ENSOKIP00005071932.1, ENSOKIT00005076636.1
    Conserved Domains (5) summary
    cd05759
    Location:137 → 218
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:390 → 487
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    TIGR00864
    Location:221 → 350
    PCC; polycystin cation channel protein
    smart00409
    Location:26 → 115
    IG; Immunoglobulin
    cl11960
    Location:307 → 388
    Ig; Immunoglobulin domain
Nucleotide Protein
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