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LOC109889971 C-terminal-binding protein 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889971, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109889971
Gene description
C-terminal-binding protein 2
See related
Ensembl:ENSOKIG00005029252
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109889971 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
17
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (73126307..73246631)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (71507203..71626245)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 Neighboring gene erythroid differentiation-related factor 1 Neighboring gene fibronectin type III and ankyrin repeat domains 1 Neighboring gene ubiquitin thioesterase Zranb1 Neighboring gene BRISC complex subunit Abraxas 2-like Neighboring gene protein FAM53B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-terminal-binding protein 2; YLP motif-containing protein 1; histone acetyltransferase p300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    73126307..73246631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020481855.2 → XP_020337444.1  C-terminal-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C7I953
    Related
    ENSOKIP00005068979.1, ENSOKIT00005073372.1
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  2. XM_020481856.2 → XP_020337445.1  C-terminal-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C7I953
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  3. XM_031823586.1 → XP_031679446.1  C-terminal-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C7I953
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  4. XM_020481854.2 → XP_020337443.1  C-terminal-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C7I953
    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  5. XM_020481851.2 → XP_020337440.1  YLP motif-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7I917
    Related
    ENSOKIP00005069331.1, ENSOKIT00005073741.1
    Conserved Domains (1) summary
    cd05299
    Location:678 → 996
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  6. XM_020481853.2 → XP_020337442.1  histone acetyltransferase p300 isoform X3

    UniProtKB/TrEMBL
    A0A8C7I917
    Conserved Domains (1) summary
    cd05299
    Location:678 → 996
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  7. XM_020481852.2 → XP_020337441.1  histone acetyltransferase p300 isoform X2

    UniProtKB/TrEMBL
    A0A8C7IHI0
    Related
    ENSOKIP00005069152.1, ENSOKIT00005073550.1
    Conserved Domains (1) summary
    cd05299
    Location:678 → 996
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  8. XM_020481857.2 → XP_020337446.1  C-terminal-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C7IA89
    Related
    ENSOKIP00005069459.1, ENSOKIT00005073885.1
    Conserved Domains (1) summary
    cd05299
    Location:22 → 340
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

RNA

  1. XR_002255356.2 RNA Sequence

Nucleotide Protein
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