U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

edc4 enhancer of mRNA decapping 4 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889334, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
edc4
Gene description
enhancer of mRNA decapping 4
See related
Ensembl:ENSOKIG00005002249
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See edc4 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
29
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (27705563..27732883)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (23751091..23775608)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene RAN binding protein 10 Neighboring gene uncharacterized LOC116373980 Neighboring gene nuclear transport factor 2 Neighboring gene neuritin 1-like a Neighboring gene serine/threonine-protein kinase H1 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
enhancer of mRNA-decapping protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    27705563..27732883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020480692.2 → XP_020336281.1  enhancer of mRNA-decapping protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7CMG1, A0A8C7CV91
    Related
    ENSOKIP00005008374.1, ENSOKIT00005008897.1
    Conserved Domains (4) summary
    sd00039
    Location:177 → 228
    7WD40; WD40 repeat [structural motif]
    pfam15898
    Location:956 → 1029
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
    pfam16529
    Location:112 → 445
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    cl21509
    Location:1021 → 1128
    ApoLp-III_like; Apolipophorin-III and similar insect proteins

  2. XM_020480693.2 → XP_020336282.1  enhancer of mRNA-decapping protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C7D566
    Related
    ENSOKIP00005008486.1, ENSOKIT00005009018.1
    Conserved Domains (4) summary
    sd00039
    Location:177 → 228
    7WD40; WD40 repeat [structural motif]
    pfam15898
    Location:948 → 1021
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
    pfam16529
    Location:112 → 437
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    cl21509
    Location:1013 → 1120
    ApoLp-III_like; Apolipophorin-III and similar insect proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.