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LOC109888415 anoctamin-5-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109888415, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109888415
Gene description
anoctamin-5-like
See related
Ensembl:ENSOKIG00005028918
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109888415 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
20
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (70324655..70355863)
100 previous assembly Okis_V1 (GCF_002021735.1) LG3 NC_034176.1 (64452302..64495586)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene anoctamin-9-like Neighboring gene protein TSSC4 Neighboring gene vesicular glutamate transporter 2.1-like Neighboring gene growth arrest-specific protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    70324655..70355863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031812963.1 → XP_031668823.1  anoctamin-5-like

    UniProtKB/TrEMBL
    A0A8C7FBC1, A0A8C7IBD7
    Related
    ENSOKIP00005069275.1, ENSOKIT00005073683.1
    Conserved Domains (2) summary
    pfam04547
    Location:281 → 867
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:61 → 278
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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