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LOC109886876 polyadenylate-binding protein 1A [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109886876, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109886876
Gene description
polyadenylate-binding protein 1A
See related
Ensembl:ENSOKIG00005018205
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109886876 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261979.1 (13709573..13722150, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018095660.1 (6544..12100)

NW_022261979.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116359255 Neighboring gene ovarian cancer G-protein coupled receptor 1-like Neighboring gene small nucleolar RNA SNORD72 Neighboring gene small nucleolar RNA SNORD72 Neighboring gene U2 spliceosomal RNA Neighboring gene 14-3-3 protein beta/alpha-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 1A
Names
polyadenylate-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261979.1 Reference Okis_V2 Primary Assembly

    Range
    13709573..13722150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031812259.1 → XP_031668119.1  polyadenylate-binding protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A8C7GLL6, A0A8C7JLS4
    Related
    ENSOKIP00005043346.1, ENSOKIT00005045675.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_031812261.1 → XP_031668121.1  polyadenylate-binding protein 1A isoform X3

    UniProtKB/TrEMBL
    A0A8C7JLS4
    Related
    ENSOKIP00005043498.1, ENSOKIT00005045832.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 611
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  3. XM_031812260.1 → XP_031668120.1  polyadenylate-binding protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A8C7GLL6, A0A8C7JLS4
    Related
    ENSOKIP00005043474.1, ENSOKIT00005045809.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
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