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LOC109886334 CCR4-NOT transcription complex subunit 2-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109886334, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109886334
Gene description
CCR4-NOT transcription complex subunit 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109886334 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261985.1 (8573564..8643765)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018094350.1 (6302..25303)

NW_022261985.1Genomic Context describing neighboring genes Neighboring gene rab-3A-interacting protein-like Neighboring gene vegetative cell wall protein gp1-like Neighboring gene myelin regulatory factor-like protein Neighboring gene calcium-activated potassium channel subunit beta-4-like Neighboring gene receptor-type tyrosine-protein phosphatase beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261985.1 Reference Okis_V2 Primary Assembly

    Range
    8573564..8643765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031815378.1 → XP_031671238.1  CCR4-NOT transcription complex subunit 2-like

    UniProtKB/TrEMBL
    A0A8C7K9Z4
    Conserved Domains (2) summary
    pfam10486
    Location:17 → 180
    PI3K_1B_p101; Phosphoinositide 3-kinase gamma adapter protein p101 subunit
    cl02384
    Location:452 → 486
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
Heading Accession and Version

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