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LOC109886052 probable C-mannosyltransferase DPY19L3 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109886052, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109886052
Gene description
probable C-mannosyltransferase DPY19L3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109886052 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
19
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (57765777..57813620, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG3 NC_034176.1 (51940467..51988579, complement)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene protein MTSS 2-like Neighboring gene neural-cadherin-like Neighboring gene uncharacterized LOC116361585 Neighboring gene zinc finger protein 507

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    57765777..57813620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031809462.1 → XP_031665322.1  probable C-mannosyltransferase DPY19L3

    UniProtKB/TrEMBL
    A0A8C7D275
    Conserved Domains (1) summary
    pfam10034
    Location:58 → 715
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
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