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LOC109884754 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109884754, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109884754
Gene description
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1-like
See related
Ensembl:ENSOKIG00005035831
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109884754 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG1 NC_034174.2 (75958185..75980196)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018092372.1 (6022..19881, complement)

Linkage Group LG1 - NC_034174.2Genomic Context describing neighboring genes Neighboring gene protein Asterix Neighboring gene voltage-dependent P/Q-type calcium channel subunit alpha-1A-like Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like Neighboring gene complement C1q tumor necrosis factor-related protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034174.2 Reference Okis_V2 Primary Assembly

    Range
    75958185..75980196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031833425.1 → XP_031689285.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1-like

    UniProtKB/TrEMBL
    A0A8C7J4L3, A0A8C7MVN1
    Related
    ENSOKIP00005082744.1, ENSOKIT00005088312.1
    Conserved Domains (1) summary
    cd00143
    Location:45 → 339
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version

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