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LOC109883393 polyadenylate-binding protein 1A [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109883393, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109883393
Gene description
polyadenylate-binding protein 1A
See related
Ensembl:ENSOKIG00005008311
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109883393 in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG14 NC_034187.2 (89413896..89424181, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018091397.1 (140690..157438, complement)

Linkage Group LG14 - NC_034187.2Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4-like Neighboring gene ring finger protein 19A, RBR E3 ubiquitin protein ligase Neighboring gene small nucleolar RNA SNORA5 Neighboring gene grainyhead-like transcription factor 2b Neighboring gene neurocalcin-delta A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 1-A; polyadenylate-binding protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034187.2 Reference Okis_V2 Primary Assembly

    Range
    89413896..89424181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031789177.1 → XP_031645037.1  polyadenylate-binding protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A8C7F7R6
    Related
    ENSOKIP00005019321.1, ENSOKIT00005020588.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 614
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_031789176.1 → XP_031645036.1  polyadenylate-binding protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A8C7F7R6
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 614
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  3. XM_031789178.1 → XP_031645038.1  polyadenylate-binding protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A8C7F7R6
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 609
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  4. XM_031789179.1 → XP_031645039.1  polyadenylate-binding protein 1-A isoform X3

    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 220
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
Heading Accession and Version

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