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capn3a calpain 3a, (p94) [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109883062, updated on 14-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
Ensembl:ENSOKIG00005005289
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
22
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG14 NC_034187.2 (3165814..3211648, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018091218.1 (4419..33193)

Linkage Group LG14 - NC_034187.2Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene transmembrane protein 87A-like Neighboring gene vam6/Vps39-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034187.2 Reference Okis_V2 Primary Assembly

    Range
    3165814..3211648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031787652.1 → XP_031643512.1  calpain-3-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7CVG6
    Conserved Domains (4) summary
    cd15897
    Location:542 → 570
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 711
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III

  2. XM_031787653.1 → XP_031643513.1  calpain-3-like isoform X4

    UniProtKB/TrEMBL
    A0A8C7CVG6
    Conserved Domains (4) summary
    cd15897
    Location:542 → 570
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 708
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III

  3. XM_031787648.1 → XP_031643508.1  calpain-3-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7CVG6
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 714
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III

  4. XM_031787651.1 → XP_031643511.1  calpain-3-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7CVG6, A0A8C7CYW1
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 711
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III

  5. XM_031787650.1 → XP_031643510.1  calpain-3-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7CVG6, A0A8C7CYW1
    Related
    ENSOKIP00005012056.1, ENSOKIT00005012874.1
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 711
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III

  6. XM_031787649.1 → XP_031643509.1  calpain-3-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7CVG6
    Related
    ENSOKIP00005012086.1, ENSOKIT00005012904.1
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 714
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 512
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
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