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LOC109882539 TNF receptor-associated factor 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109882539, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109882539
Gene description
TNF receptor-associated factor 2
See related
Ensembl:ENSOKIG00005013883
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109882539 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (38958591..38973224)
100 previous assembly Okis_V1 (GCF_002021735.1) LG3 NC_034176.1 (33170370..33183315)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP4-like Neighboring gene rab-like protein 6 Neighboring gene tenascin Neighboring gene beta-1,3-galactosyltransferase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    38958591..38973224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020474644.2 → XP_020330233.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0A8C7FSM2, A0A8C7FU10
    Related
    ENSOKIP00005032726.1, ENSOKIT00005034555.1
    Conserved Domains (6) summary
    TIGR00599
    Location:69 → 198
    rad18; DNA repair protein rad18
    pfam02176
    Location:219 → 276
    zf-TRAF; TRAF-type zinc finger
    cd00162
    Location:75 → 113
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl02446
    Location:453 → 613
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:383 → 445
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl17238
    Location:73 → 114
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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