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LOC109881765 probable ATP-dependent RNA helicase ddx6 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109881765, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109881765
Gene description
probable ATP-dependent RNA helicase ddx6
See related
Ensembl:ENSOKIG00005014390
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109881765 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
14
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (70880207..70895957)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018090597.1 (126880..139766)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene apolipoprotein A-IV-like Neighboring gene meprin A subunit beta-like Neighboring gene mitochondrial import receptor subunit TOM40 homolog Neighboring gene B-cell lymphoma 3 protein homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase ddx6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    70880207..70895957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031787100.1 → XP_031642960.1  probable ATP-dependent RNA helicase ddx6

    UniProtKB/TrEMBL
    A0A8C7FVB8
    Conserved Domains (2) summary
    cd18787
    Location:301 → 430
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:90 → 291
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  2. XM_031787099.1 → XP_031642959.1  probable ATP-dependent RNA helicase ddx6

    UniProtKB/TrEMBL
    A0A8C7FVB8
    Related
    ENSOKIP00005033697.1, ENSOKIT00005035570.1
    Conserved Domains (2) summary
    cd18787
    Location:301 → 430
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:90 → 291
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  3. XM_020473880.2 → XP_020329469.2  probable ATP-dependent RNA helicase ddx6

    UniProtKB/TrEMBL
    A0A8C7FVB8
    Conserved Domains (2) summary
    cd18787
    Location:301 → 430
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:90 → 291
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6
Nucleotide Protein
Heading Accession and Version

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