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kirrel1a kirre like nephrin family adhesion molecule 1a [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109879341, updated on 14-Mar-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
Ensembl:ENSOKIG00005008088
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
15
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG9 NC_034182.2 (27373891..27412942)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018089557.1 (800595..856706)

Linkage Group LG9 - NC_034182.2Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor, alpha 1 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034182.2 Reference Okis_V2 Primary Assembly

    Range
    27373891..27412942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031832279.1 → XP_031688139.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7DF94
    Related
    ENSOKIP00005019716.1, ENSOKIT00005021007.1
    Conserved Domains (3) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:231 → 302
    IG_like; Immunoglobulin like
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_020471512.2 → XP_020327101.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7DD31, A0A8C7DF94
    Related
    ENSOKIP00005019607.1, ENSOKIT00005020896.1
    Conserved Domains (3) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:231 → 302
    IG_like; Immunoglobulin like
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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