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LOC109877878 CCR4-NOT transcription complex subunit 6-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109877878, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109877878
Gene description
CCR4-NOT transcription complex subunit 6-like
See related
Ensembl:ENSOKIG00005001580
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109877878 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (6466331..6486902)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018089030.1 (45340..70923)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116361224 Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene C-X-C motif chemokine 13-like Neighboring gene C-X-C motif chemokine 13-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    6466331..6486902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031816787.1 → XP_031672647.1  CCR4-NOT transcription complex subunit 6-like

    UniProtKB/TrEMBL
    A0A8C7CBS9
    Related
    ENSOKIP00005003454.1, ENSOKIT00005003624.1
    Conserved Domains (3) summary
    COG4886
    Location:59 → 150
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:60 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    cl00490
    Location:193 → 533
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases