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skic3 SKI3 subunit of superkiller complex [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109875838, updated on 11-Apr-2024

Summary

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Gene symbol
skic3
Gene description
SKI3 subunit of superkiller complex
See related
Ensembl:ENSOKIG00005001473
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
ttc37
Orthologs
human zebrafish all
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Genomic context

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See skic3 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
41
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (14818867..14851720, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG3 NC_034176.1 (8284185..8316978, complement)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene multiple C2 and transmembrane domain-containing protein 1-like Neighboring gene grass carp reovirus (GCRV)-induced gene 2p Neighboring gene arrestin domain-containing protein 3 Neighboring gene arrestin domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 37
Names
tetratricopeptide repeat domain 37

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    14818867..14851720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031817677.1 → XP_031673537.1  tetratricopeptide repeat protein 37

    UniProtKB/TrEMBL
    A0A8C7F037
    Related
    ENSOKIP00005003289.1, ENSOKIT00005003458.1
    Conserved Domains (2) summary
    TIGR02917
    Location:353 → 1157
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:39 → 69
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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