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LOC109873698 tight junction protein ZO-2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109873698, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109873698
Gene description
tight junction protein ZO-2
See related
Ensembl:ENSOKIG00005051004
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109873698 in Genome Data Viewer
Location:
chromosome: LG29
Exon count:
24
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG29 NC_034202.2 (18381891..18417993)
100 previous assembly Okis_V1 (GCF_002021735.1) LG29 NC_034202.1 (17523302..17559387)

Linkage Group LG29 - NC_034202.2Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF62.1-like Neighboring gene phosphatidylinositol 4-phosphate 5-kinase type-1 beta-like Neighboring gene amyloid-beta A4 precursor protein-binding family A member 1-like Neighboring gene MAM domain-containing protein 2-like Neighboring gene structural maintenance of chromosomes protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034202.2 Reference Okis_V2 Primary Assembly

    Range
    18381891..18417993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020465367.2 → XP_020320956.1  tight junction protein ZO-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7LLU4
    Conserved Domains (5) summary
    PRK12678
    Location:89 → 285
    PRK12678; transcription termination factor Rho; Provisional
    cd00992
    Location:9 → 94
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR01642
    Location:196 → 300
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl17036
    Location:630 → 695
    SH3; Src Homology 3 domain superfamily
    cl17190
    Location:729 → 907
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

  2. XM_020465366.2 → XP_020320955.1  tight junction protein ZO-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7LLU4, A0A8C7LXN0
    Related
    ENSOKIP00005118028.1, ENSOKIT00005126164.1
    Conserved Domains (5) summary
    PRK12678
    Location:89 → 285
    PRK12678; transcription termination factor Rho; Provisional
    cd00992
    Location:9 → 94
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR01642
    Location:196 → 300
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl17036
    Location:630 → 695
    SH3; Src Homology 3 domain superfamily
    cl17190
    Location:729 → 907
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...
Nucleotide Protein
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