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alg9 ALG9 alpha-1,2-mannosyltransferase [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109872814, updated on 14-Mar-2024

Summary

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Gene symbol
alg9
Gene description
ALG9 alpha-1,2-mannosyltransferase
See related
Ensembl:ENSOKIG00005045587
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See alg9 in Genome Data Viewer
Location:
chromosome: LG28
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG28 NC_034201.2 (52021953..52075852)
100 previous assembly Okis_V1 (GCF_002021735.1) LG28 NC_034201.1 (307963..378138, complement)

Linkage Group LG28 - NC_034201.2Genomic Context describing neighboring genes Neighboring gene large neutral amino acids transporter small subunit 4 Neighboring gene nectin-1-like Neighboring gene MIA SH3 domain containing Neighboring gene cilia and flagella associated protein 68 Neighboring gene dihydrolipoamide S-acetyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,2-mannosyltransferase ALG9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034201.2 Reference Okis_V2 Primary Assembly

    Range
    52021953..52075852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020464163.2 → XP_020319752.1  alpha-1,2-mannosyltransferase ALG9 isoform X1

    UniProtKB/TrEMBL
    A0A8C7L043, A0A8C7N6S9
    Related
    ENSOKIP00005105017.1, ENSOKIT00005112573.1
    Conserved Domains (1) summary
    pfam03901
    Location:63 → 485
    Glyco_transf_22; Alg9-like mannosyltransferase family

  2. XM_020464164.2 → XP_020319753.1  alpha-1,2-mannosyltransferase ALG9 isoform X2

    UniProtKB/TrEMBL
    A0A8C7KRB7, A0A8C7L043
    Related
    ENSOKIP00005105033.1, ENSOKIT00005112593.1
    Conserved Domains (1) summary
    pfam03901
    Location:63 → 444
    Glyco_transf_22; Alg9-like mannosyltransferase family

  3. XM_020464165.1 → XP_020319754.1  alpha-1,2-mannosyltransferase ALG9 isoform X3

    Conserved Domains (1) summary
    cl21590
    Location:1 → 310
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  4. XM_031807853.1 → XP_031663713.1  alpha-1,2-mannosyltransferase ALG9 isoform X3

    Conserved Domains (1) summary
    cl21590
    Location:1 → 310
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

  1. XR_002252509.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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