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exosc4 exosome component 4 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109872286, updated on 11-Apr-2024

Summary

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Gene symbol
exosc4
Gene description
exosome component 4
See related
Ensembl:ENSOKIG00005027091
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See exosc4 in Genome Data Viewer
Location:
chromosome: LG27
Exon count:
3
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG27 NC_034200.2 (16061388..16063147)
100 previous assembly Okis_V1 (GCF_002021735.1) LG27 NC_034200.1 (12886003..12888008)

Linkage Group LG27 - NC_034200.2Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L2-like Neighboring gene cAMP-dependent protein kinase catalytic subunit beta-like Neighboring gene glycosylphosphatidylinositol anchor attachment 1 protein-like Neighboring gene SHANK associated RH domain interactor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034200.2 Reference Okis_V2 Primary Assembly

    Range
    16061388..16063147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020463470.2 → XP_020319059.1  exosome complex component RRP41

    UniProtKB/TrEMBL
    A0A8C7HUB0
    Related
    ENSOKIP00005063216.1, ENSOKIT00005067193.1
    Conserved Domains (1) summary
    cd11370
    Location:11 → 237
    RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

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