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LOC109872019 aspartyl/asparaginyl beta-hydroxylase [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109872019, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109872019
Gene description
aspartyl/asparaginyl beta-hydroxylase
See related
Ensembl:ENSOKIG00005048396
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109872019 in Genome Data Viewer
Location:
chromosome: LG27
Exon count:
13
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG27 NC_034200.2 (28680974..28706787, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG27 NC_034200.1 (25854124..25879733, complement)

Linkage Group LG27 - NC_034200.2Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-2A Neighboring gene chromodomain-helicase-DNA-binding protein 7-like Neighboring gene alpha-tocopherol transfer protein-like Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034200.2 Reference Okis_V2 Primary Assembly

    Range
    28680974..28706787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031806513.1 → XP_031662373.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (1) summary
    pfam05279
    Location:23 → 111
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_031806512.1 → XP_031662372.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    UniProtKB/TrEMBL
    A0A8C7L560
    Related
    ENSOKIP00005110949.1, ENSOKIT00005118803.1
    Conserved Domains (1) summary
    pfam05279
    Location:23 → 111
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_031806509.1 → XP_031662369.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (1) summary
    pfam05279
    Location:23 → 126
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_020463092.2 → XP_020318681.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A8C7LA50
    Related
    ENSOKIP00005110938.1, ENSOKIT00005118792.1
    Conserved Domains (1) summary
    pfam05279
    Location:23 → 126
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_031806511.1 → XP_031662371.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (1) summary
    pfam05279
    Location:18 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_031806510.1 → XP_031662370.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (1) summary
    pfam05279
    Location:18 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  7. XM_031806514.1 → XP_031662374.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Conserved Domains (1) summary
    pfam05279
    Location:18 → 106
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  8. XM_020463091.2 → XP_020318680.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (1) summary
    pfam05279
    Location:32 → 135
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  9. XM_020463093.2 → XP_020318682.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (1) summary
    pfam05279
    Location:32 → 120
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  10. XM_020463090.2 → XP_020318679.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A8C7L575
    Related
    ENSOKIP00005110964.1, ENSOKIT00005118818.1
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 135
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
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