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LOC109871790 dnaJ homolog subfamily B member 6 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109871790, updated on 25-Jan-2024

Summary

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Gene symbol
LOC109871790
Gene description
dnaJ homolog subfamily B member 6
See related
Ensembl:ENSOKIG00005026010
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109871790 in Genome Data Viewer
Location:
chromosome: LG27
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG27 NC_034200.2 (20727001..20744210, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG27 NC_034200.1 (17778942..17795639, complement)

Linkage Group LG27 - NC_034200.2Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 10-B Neighboring gene potassium voltage-gated channel subfamily B member 2-like Neighboring gene transient receptor potential cation channel subfamily A member 1-like Neighboring gene tiggy-winkle hedgehog protein-like Neighboring gene protein canopy-1 Neighboring gene homeobox protein engrailed-2b-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034200.2 Reference Okis_V2 Primary Assembly

    Range
    20727001..20744210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020462791.2 → XP_020318380.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C7HM55
    Related
    ENSOKIP00005060647.1, ENSOKIT00005064467.1
    Conserved Domains (1) summary
    PRK10767
    Location:4 → 139
    PRK10767; chaperone protein DnaJ; Provisional

  2. XM_020462792.2 → XP_020318381.1  dnaJ homolog subfamily B member 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C7HPJ3
    Conserved Domains (1) summary
    PRK10767
    Location:4 → 139
    PRK10767; chaperone protein DnaJ; Provisional
Nucleotide Protein
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