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LOC109870895 60 kDa heat shock protein, mitochondrial [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109870895, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109870895
Gene description
60 kDa heat shock protein, mitochondrial
See related
Ensembl:ENSOKIG00005020599
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109870895 in Genome Data Viewer
Location:
chromosome: LG26
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG26 NC_034199.2 (37785758..37793027, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG26 NC_034199.1 (35398829..35406070, complement)

Linkage Group LG26 - NC_034199.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like Neighboring gene splicing factor 3B subunit 1-like Neighboring gene small nucleolar RNA SNORD15 Neighboring gene coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like Neighboring gene MOB-like protein phocein Neighboring gene raftlin-2 Neighboring gene inactive phospholipase C-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in apoptotic mitochondrial changes IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-alpha production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interleukin-6 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60 kDa heat shock protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034199.2 Reference Okis_V2 Primary Assembly

    Range
    37785758..37793027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020461588.2 → XP_020317177.1  60 kDa heat shock protein, mitochondrial

    UniProtKB/TrEMBL
    A0A8C7GVT7, A0A8C7H1C7
    Related
    ENSOKIP00005049081.1, ENSOKIT00005051739.1
    Conserved Domains (1) summary
    cd03344
    Location:28 → 548
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases