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zgc:103759 U8 snoRNA-decapping enzyme [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109870870, updated on 14-Mar-2024

Summary

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Gene symbol
zgc:103759
Gene description
U8 snoRNA-decapping enzyme
See related
Ensembl:ENSOKIG00005017972
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See zgc:103759 in Genome Data Viewer
Location:
chromosome: LG26
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG26 NC_034199.2 (17272698..17282330, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG26 NC_034199.1 (9218288..9227735)

Linkage Group LG26 - NC_034199.2Genomic Context describing neighboring genes Neighboring gene nuclear envelope integral membrane protein 2 Neighboring gene major facilitator superfamily domain containing 6b Neighboring gene C-X-C chemokine receptor type 1-like Neighboring gene FKBP prolyl isomerase 7 Neighboring gene tensin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphodiesterase decapping endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sno(s)RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U8 snoRNA-decapping enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034199.2 Reference Okis_V2 Primary Assembly

    Range
    17272698..17282330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031805425.1 → XP_031661285.1  U8 snoRNA-decapping enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C7GJJ5
    Conserved Domains (2) summary
    COG0494
    Location:38 → 109
    MutT; 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms]
    PRK15489
    Location:160 → 204
    nfrB; glycosyl transferase family protein

  2. XM_031805423.1 → XP_031661283.1  U8 snoRNA-decapping enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C7GJJ5
    Conserved Domains (2) summary
    COG0494
    Location:38 → 109
    MutT; 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms]
    PRK15489
    Location:160 → 204
    nfrB; glycosyl transferase family protein

  3. XM_020461550.2 → XP_020317139.1  U8 snoRNA-decapping enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C7GJJ5
    Conserved Domains (2) summary
    COG0494
    Location:38 → 109
    MutT; 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms]
    PRK15489
    Location:157 → 201
    nfrB; glycosyl transferase family protein

  4. XM_031805424.1 → XP_031661284.1  U8 snoRNA-decapping enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C7GJJ5
    Conserved Domains (2) summary
    COG0494
    Location:38 → 109
    MutT; 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms]
    PRK15489
    Location:160 → 204
    nfrB; glycosyl transferase family protein

  5. XM_020461551.2 → XP_020317140.1  U8 snoRNA-decapping enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C7GJJ5
    Related
    ENSOKIP00005042524.1, ENSOKIT00005044831.1
    Conserved Domains (2) summary
    COG0494
    Location:38 → 109
    MutT; 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms]
    PRK15489
    Location:157 → 201
    nfrB; glycosyl transferase family protein
Nucleotide Protein
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