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LOC109868275 exosome RNA helicase MTR4 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109868275, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109868275
Gene description
exosome RNA helicase MTR4
See related
Ensembl:ENSOKIG00005029098
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109868275 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
26
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG23 NC_034196.2 (3219635..3274029, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG23 NC_034196.1 (40698771..40759223, complement)

Linkage Group LG23 - NC_034196.2Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1 Neighboring gene uncharacterized protein DDB_G0271670-like Neighboring gene phospholipid phosphatase 1 Neighboring gene small nucleolar RNA SNORA35 Neighboring gene proline-serine-threonine phosphatase-interacting protein 2 Neighboring gene activated RNA polymerase II transcriptional coactivator p15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome RNA helicase MTR4
Names
superkiller viralicidic activity 2-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034196.2 Reference Okis_V2 Primary Assembly

    Range
    3219635..3274029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031803371.1 → XP_031659231.1  exosome RNA helicase MTR4

    UniProtKB/TrEMBL
    A0A8C7IN44, A0A8C7MRH5
    Related
    ENSOKIP00005073037.1, ENSOKIT00005077825.1
    Conserved Domains (1) summary
    COG4581
    Location:10 → 1040
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases