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skic8 SKI8 subunit of superkiller complex [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867600, updated on 14-Mar-2024

Summary

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Gene symbol
skic8
Gene description
SKI8 subunit of superkiller complex
See related
Ensembl:ENSOKIG00005048375
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
wdr61
Orthologs
human zebrafish all
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Genomic context

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See skic8 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (8450974..8468931, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (7726904..7744768, complement)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit alpha 4 Neighboring gene iron-responsive element binding protein 2 Neighboring gene solute carrier family 25 member 44a Neighboring gene cellular retinoic acid binding protein 1a Neighboring gene SIN3 transcription regulator family member Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 61
Names
WD repeat domain 61

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    8450974..8468931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020456846.2 → XP_020312435.1  WD repeat-containing protein 61

    UniProtKB/TrEMBL
    A0A8C7LEE4
    Conserved Domains (2) summary
    cd00200
    Location:15 → 302
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:110 → 146
    7WD40; WD40 repeat [structural motif]

  2. XM_020456848.2 → XP_020312437.1  WD repeat-containing protein 61

    UniProtKB/TrEMBL
    A0A8C7LEE4
    Related
    ENSOKIP00005110936.1, ENSOKIT00005118790.1
    Conserved Domains (2) summary
    cd00200
    Location:15 → 302
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:110 → 146
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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