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LOC109867346 CCR4-NOT transcription complex subunit 2-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867346, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109867346
Gene description
CCR4-NOT transcription complex subunit 2-like
See related
Ensembl:ENSOKIG00005023295
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109867346 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (300718..327376)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (76661..102169)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene formin-binding protein 4-like Neighboring gene leucine-rich repeat-containing protein 10-like Neighboring gene solute carrier family 41 member 2-like Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene small nucleolar RNA SNORD67

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    300718..327376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031801886.1 → XP_031657746.1  CCR4-NOT transcription complex subunit 2-like isoform X4

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:401 → 524
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  2. XM_020456463.2 → XP_020312052.2  CCR4-NOT transcription complex subunit 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7HAQ6, A0A8C7MI99
    Related
    ENSOKIP00005055674.1, ENSOKIT00005059076.1
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 525
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  3. XM_020456465.2 → XP_020312054.1  CCR4-NOT transcription complex subunit 2-like isoform X6

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:391 → 514
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  4. XM_031801880.1 → XP_031657740.1  CCR4-NOT transcription complex subunit 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 527
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  5. XM_031801881.1 → XP_031657741.1  CCR4-NOT transcription complex subunit 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:401 → 526
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  6. XM_020456464.2 → XP_020312053.1  CCR4-NOT transcription complex subunit 2-like isoform X5

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:391 → 516
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  7. XM_031801889.1 → XP_031657749.1  CCR4-NOT transcription complex subunit 2-like isoform X6

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:391 → 514
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  8. XM_031801884.1 → XP_031657744.1  CCR4-NOT transcription complex subunit 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7HAQ6, A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 525
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  9. XM_031801888.1 → XP_031657748.1  CCR4-NOT transcription complex subunit 2-like isoform X6

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:391 → 514
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  10. XM_020456462.2 → XP_020312051.2  CCR4-NOT transcription complex subunit 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 527
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  11. XM_031801882.1 → XP_031657742.1  CCR4-NOT transcription complex subunit 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7MI99
    Related
    ENSOKIP00005055769.1, ENSOKIT00005059198.1
    Conserved Domains (1) summary
    pfam04153
    Location:401 → 526
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  12. XM_031801885.1 → XP_031657745.1  CCR4-NOT transcription complex subunit 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7HAQ6, A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 525
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  13. XM_031801887.1 → XP_031657747.1  CCR4-NOT transcription complex subunit 2-like isoform X5

    UniProtKB/TrEMBL
    A0A8C7MI99
    Related
    ENSOKIP00005055730.1, ENSOKIT00005059145.1
    Conserved Domains (1) summary
    pfam04153
    Location:391 → 516
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  14. XM_020456461.2 → XP_020312050.2  CCR4-NOT transcription complex subunit 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7MI99
    Conserved Domains (1) summary
    pfam04153
    Location:402 → 527
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
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