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LOC109867006 CCR4-NOT transcription complex subunit 1-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867006, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109867006
Gene description
CCR4-NOT transcription complex subunit 1-like
See related
Ensembl:ENSOKIG00005017728
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109867006 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
47
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (41071742..41107095)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (41955979..41986118)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene G1/S-specific cyclin-D2 Neighboring gene lysine-specific demethylase 7B-like Neighboring gene vitamin D(3) 25-hydroxylase-like Neighboring gene SET domain containing 6, protein lysine methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    41071742..41107095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031802015.1 → XP_031657875.1  CCR4-NOT transcription complex subunit 1-like isoform X9

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2420
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  2. XM_031802007.1 → XP_031657867.1  CCR4-NOT transcription complex subunit 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2450
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  3. XM_031802019.1 → XP_031657879.1  CCR4-NOT transcription complex subunit 1-like isoform X12

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2399
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  4. XM_031802012.1 → XP_031657872.1  CCR4-NOT transcription complex subunit 1-like isoform X6

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2443
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  5. XM_031802017.1 → XP_031657877.1  CCR4-NOT transcription complex subunit 1-like isoform X10

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2413
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  6. XM_031802013.1 → XP_031657873.1  CCR4-NOT transcription complex subunit 1-like isoform X7

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2438
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  7. XM_031802020.1 → XP_031657880.1  CCR4-NOT transcription complex subunit 1-like isoform X13

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2387
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  8. XM_031802014.1 → XP_031657874.1  CCR4-NOT transcription complex subunit 1-like isoform X8

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2431
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  9. XM_031802021.1 → XP_031657881.1  CCR4-NOT transcription complex subunit 1-like isoform X14

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2380
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  10. XM_031802010.1 → XP_031657870.1  CCR4-NOT transcription complex subunit 1-like isoform X4

    UniProtKB/TrEMBL
    A0A8C7GIH7
    Conserved Domains (2) summary
    COG5103
    Location:843 → 2446
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  11. XM_031802009.1 → XP_031657869.1  CCR4-NOT transcription complex subunit 1-like isoform X3

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:844 → 2447
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  12. XM_031802023.1 → XP_031657883.1  CCR4-NOT transcription complex subunit 1-like isoform X16

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Related
    ENSOKIP00005042227.1, ENSOKIT00005044520.1
    Conserved Domains (2) summary
    COG5103
    Location:844 → 2377
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  13. XM_031802022.1 → XP_031657882.1  CCR4-NOT transcription complex subunit 1-like isoform X15

    UniProtKB/TrEMBL
    A0A8C7GIH7
    Conserved Domains (2) summary
    COG5103
    Location:840 → 2392
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  14. XM_031802024.1 → XP_031657884.1  CCR4-NOT transcription complex subunit 1-like isoform X17

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Related
    ENSOKIP00005042214.1, ENSOKIT00005044504.1
    Conserved Domains (2) summary
    COG5103
    Location:840 → 2373
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  15. XM_031802008.1 → XP_031657868.1  CCR4-NOT transcription complex subunit 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:845 → 2448
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:498 → 657
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  16. XM_031802011.1 → XP_031657871.1  CCR4-NOT transcription complex subunit 1-like isoform X5

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:842 → 2445
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:498 → 654
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  17. XM_031802025.1 → XP_031657885.1  CCR4-NOT transcription complex subunit 1-like isoform X18

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:838 → 2371
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:498 → 654
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  18. XM_031802018.1 → XP_031657878.1  CCR4-NOT transcription complex subunit 1-like isoform X11

    UniProtKB/TrEMBL
    A0A8C7GEK5
    Conserved Domains (2) summary
    COG5103
    Location:847 → 2408
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam16418
    Location:500 → 659
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
Nucleotide Protein
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