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LOC109867005 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867005, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109867005
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109867005 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (40548298..40553844, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (41418393..41422844, complement)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene adenosine deaminase 2-A Neighboring gene RIB43A-like with coiled-coils protein 2 Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like Neighboring gene dual specificity tyrosine-phosphorylation-regulated kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    40548298..40553844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031801878.1 → XP_031657738.1  probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X2

    Conserved Domains (3) summary
    cd02510
    Location:161 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:475 → 599
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl17068
    Location:58 → 105
    AFD_class_I; Adenylate forming domain, Class I superfamily

  2. XM_031801877.1 → XP_031657737.1  probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X1

    Conserved Domains (3) summary
    cd02510
    Location:161 → 461
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:476 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl17068
    Location:58 → 105
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
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