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LOC109866802 terminal nucleotidyltransferase 4B [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109866802, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109866802
Gene description
terminal nucleotidyltransferase 4B
See related
Ensembl:ENSOKIG00005039482
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109866802 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
13
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (44093557..44110865, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (45100586..45116977, complement)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene retinoblastoma-like protein 2 Neighboring gene sal-like protein 1 Neighboring gene sorting nexin 20 Neighboring gene M-phase phosphoprotein 6 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 2 Neighboring gene glucose-6-phosphate isomerase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAMP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
terminal nucleotidyltransferase 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    44093557..44110865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020455642.2 → XP_020311231.2  terminal nucleotidyltransferase 4B isoform X1

    UniProtKB/TrEMBL
    A0A8C7JT66
    Related
    ENSOKIP00005091041.1, ENSOKIT00005097289.1
    Conserved Domains (1) summary
    COG5260
    Location:221 → 496
    TRF4; DNA polymerase sigma [Replication, recombination and repair]

  2. XM_020455643.2 → XP_020311232.1  terminal nucleotidyltransferase 4B isoform X2

    Conserved Domains (1) summary
    COG5260
    Location:2 → 265
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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